A local macromolecular structure database for crystallographic laboratories
نویسندگان
چکیده
منابع مشابه
Computational aspects of high-throughput crystallographic macromolecular structure determination.
Chapter 4 Computational aspects of high-throughput crystallographic macromolecular structure determination Paul D. Adams, Ralf W. Grosse-Kunstleve and Axel T. Brunger Lawrence Berkeley Laboratory, 1 Cyclotron Road, BLDG 64R0121, Berkeley CA 94720, USA. The Howard Hughes Medical Institute and Departments of Molecular and Cellular Physiology, Neurology and Neurological Sciences, Structural Biolog...
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A simple weighting scheme for atomic refinement is discussed. The approach, called 'Bayesian weighting', is designed to be robust with respect to the bias that arises from the incomplete nature of the atomic model, which in macromolecular crystallography is typically quite serious. Bayesian weights are based on the mean-squared residual errors over shells of resolution, with centric and acentri...
متن کاملA database of macromolecular motions.
We describe a database of macromolecular motions meant to be of general use to the structural community. The database, which is accessible on the World Wide Web with an entry point at http://bioinfo.mbb.yale.edu/MolMovDB , attempts to systematize all instances of protein and nucleic acid movement for which there is at least some structural information. At present it contains >120 motions, most ...
متن کاملE-MSD: the European Bioinformatics Institute Macromolecular Structure Database
The E-MSD macromolecular structure relational database (http://www.ebi.ac.uk/msd) is designed to be a single access point for protein and nucleic acid structures and related information. The database is derived from Protein Data Bank (PDB) entries. Relational database technologies are used in a comprehensive cleaning procedure to ensure data uniformity across the whole archive. The search datab...
متن کاملThe Macromolecular Crystallographic Information File (mmCIF)
Introduction The Protein Data Bank (PDB) format provides a standard representation for macromolecular structure data derived from X-ray diffraction and NMR studies. This representation has served the community well since its inception in the 1970's (Bernstein et al. 1) and a large amount of software that uses this representation has been written. However, it is widely recognized that the curren...
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ژورنال
عنوان ژورنال: Acta Crystallographica Section A Foundations of Crystallography
سال: 1996
ISSN: 0108-7673
DOI: 10.1107/s0108767396095967